Sources
We are grateful to the many original sources of our data to enable PubCaseFinder to integrate them in this manner.
| Source | Version / Ingest Date | Ingested Data | License |
|---|---|---|---|
| BodyParts3D/Anatomography | 2024 | 3D polygon data used on the BodyParts3D | License URL |
| GenCC | 2024-03-11 | Desease-Gene associations for OMIM and Orphanet diseases GenCC Data |
License URL |
| GeneReviews | 2024-03-11 | Relationships between GeneReviews and OMIM NBKid_shortname_OMIM.txt |
License URL |
| Genetic Testing Registry (GTR) | 2024-03-11 | Relationships between GTR and Mondo Mondo Disease Ontology |
(Re)usable Data Project |
| Human Phenotype Ontology | v2024-03-06 | English terms of phenotypic abnormalities encountered in human disease, Desease-Phenotype associations for OMIM and Orphanet diseases Human Phenotype Ontology HPO Annotations |
(Re)usable Data Project |
| Human Phenotype Ontology Japanese | 2024-03-11 | Japanese terms of phenotypic abnormalities encountered in human disease Human Phenotype Ontology Japanese Human Phenotype Ontology Japanese (Inheritance) |
(Re)usable Data Project |
| J-GLOBAL | 2021 | Bibliographic information of case reports in J-GLOBAL | - |
| J-STAGE | 2021 | Bibliographic information of case reports in J-STAGE | - |
| KEGG Disease | 2024-03-11 | A collection of disease entries, each containing a list of human disease genes and/or pathogens |
Copyright and Disclaimer |
| MedGen | 2024-03-11 | Mode of inheritances for OMIM diseases, Desease-Gene associations for OMIM diseases MedGen_HPO_OMIM_Mapping.txt.gz mim2gene_medgen |
License URL |
| Monarch Disease Ontology | 2024-03-04 | English terms of rare and genetic diseases Mondo Disease Ontology |
(Re)usable Data Project |
| Monarch Disease Ontology Japanese | 2024-03-11 | Japanese terms of rare and genetic diseases |
- |
| Nanbyo Disease Ontology | 2023-11-28 | Japanese terms of rare and genetic diseases Nanbyo Disease Ontology |
License URL |
| NCBI Gene | 2024-03-11 | Gene information for Homo sapiens Gene summary for Homo sapiens Homo_sapiens.gene_info.gz NCBI_gene_summary.txt |
License URL |
| Orphanet | 2023-12-04 | Desease-Gene associations for Orphanet diseases Desease-Phenotype associations for Orphanet diseases en_product6.xml en_product4.xml |
(Re)usable Data Project |
| PubMed | 2024 | Bibliographic information of case reports in PubMed | License URL |
| UR-DBMS | 2024-03-11 | Relationships between UR-DBMS and OMIM/Orphanet Relationships between UR-DBMS and OMIM Relationships between UR-DBMS and Orphanet |
- |